Basic Information
Locus ID:
nbisL1-mrna-13925
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 13902172 | 13905559 | - | nbisL1-mrna-13925 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 84,012.77 Da | 39.96 | 95.68 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 43 | 339 | 9.17567E-154 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 343 | 678 | 2.05773E-151 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 348 | 674 | 4.8E-24 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 50 | 333 | 6.0E-8 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 42 | 339 | 1.26E-37 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 342 | 679 | 3.92E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 341 | 680 | 5.3E-48 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 42 | 340 | 1.6E-30 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 43 | 340 | 27.76025 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 343 | 679 | 28.953905 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58170.1 | SHV3-like 5. | 0 |
| RefSeq | XP_024458236.2 | - | 0 |
| Q9LVN0 | Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana OX=3702 GN=GDPDL7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A836IXK2 | glycerophosphodiester phosphodiesterase OS=Salix suchowensis OX=1278906 GN=IMY05_006G0149400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology