Basic Information
Locus ID:
nbisL1-mrna-139
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 1034410 | 1039436 | + | nbisL1-mrna-139 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 46,926.03 Da | 30.11 | 82.19 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 266 | 300 | 0.023 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 62 | 303 | 1.97E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 37 | 110 | 2.7E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 218 | 363 | 3.4E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 111 | 215 | 1.9E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 175 | 214 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 46 | 88 | 73.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 300 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 0.0056 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34260.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021687381.1 | WD repeat-containing protein 55 isoform X1 [Hevea brasiliensis] | 0 |
| O80775 | WD repeat-containing protein 55 OS=Arabidopsis thaliana OX=3702 GN=WDR55 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LF52 | WD repeat-containing protein 55 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28624 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22141 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025008 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g063810 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg25929, Sbi_jg25930, Sbi_jg9768 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18901 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025658 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl21016, Sgl21017, Sgl44624, Sgl49381 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011597, gene:ENSEOMG00000023271 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0003350, CQ.Regalona.r1.8BG0003430 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30016120 |
| Apiaceae | Apium graveolens | 1 | Ag2G00506 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G004770 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705065, gene-LOC103716964 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1288.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G10923 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G34260.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016919m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g16550.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g009990.2N, BniB06g009710.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G2330, Ceq06G0020 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G2638, Cgl06G0023 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05310 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0001s00037.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g13440 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10691 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.71 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025470 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36127 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.3939, BH05.4029, CH04.1040, CH05.4227 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0147700, gene-QOZ80_2BG0203130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0082020.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016085, gene-QYE76_016100 |
| Poaceae | Oryza coarctata | 2 | Oco13G014920, Oco14G015740 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g46620.1 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503976, Pt_Chr0504064 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G018440, Chr13G002850 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G544900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG051720, gene_TRIDC1BG058960 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G350600.1, TraesCS1B02G364900.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb349300_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40034, nbis-gene-8554 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17260 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.771, evm.TU.LG20.1135 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11460 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.7 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-139, nbisL1-mrna-153 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10518 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.340 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001759, Maker00006803 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6620 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2505 |
| Salicaceae | Populus euphratica | 2 | populus_peu09588, populus_peu24947 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621860, gene-LOC132624855 |
| Solanaceae | Solanum chilense | 1 | SOLCI004561700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008855 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11527 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1766 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01530.v3.1 |