Basic Information
Locus ID:
nbisL1-mrna-13893
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 13621905 | 13626993 | - | nbisL1-mrna-13893 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 47,187.78 Da | 41.09 | 69.30 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 273 | 340 | 1.09116E-28 | - |
| CDD | cd12352 | RRM1_TIA1_like | 45 | 115 | 4.82416E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 45 | 111 | 9.6E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 277 | 334 | 2.1E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 42 | 171 | 1.17E-29 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 262 | 344 | 8.14E-16 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 126 | 250 | 8.8E-8 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 125 | 1.9E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 251 | 345 | 4.4E-16 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 129 | 190 | 0.41 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 274 | 336 | 1.0E-7 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 44 | 113 | 3.9E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 277 | 340 | 10.42841 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 43 | 117 | 15.033368 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 256 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021636531.1 | - | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M1J5 | Uncharacterized protein MANES_16G093200 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology