Basic Information
Locus ID:
nbisL1-mrna-13851
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
recombinational repair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 6087563 | 6099149 | + | nbisL1-mrna-13851 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 108,748.10 Da | 43.69 | 79.30 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 826 | 931 | 1.22394E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 256 | 580 | 3.25239E-83 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 277 | 657 | 2.2E-66 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 694 | 731 | 3.8E-8 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 822 | 921 | 7.2E-14 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 237 | 580 | 2.92E-42 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 588 | 978 | 2.41E-55 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 687 | 738 | 1.04E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 680 | 745 | 2.7E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 231 | 321 | 3.3E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 595 | 979 | 2.0E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 348 | 436 | 4.4E-9 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 454 | 591 | 2.5E-31 | IPR038718 |
| SMART | SM00184 | ring_2 | 695 | 733 | 1.8E-6 | IPR001841 |
| SMART | SM00490 | helicmild6 | 838 | 921 | 1.1E-16 | IPR001650 |
| SMART | SM00487 | ultradead3 | 252 | 559 | 3.1E-26 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 271 | 542 | 11.615665 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 811 | 974 | 13.90986 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 695 | 734 | 11.323791 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 710 | 719 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 31 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021675592.1 | helicase-like transcription factor CHR28 [Hevea brasiliensis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5QLQ8 | Putative ATP-dependent helicase C23E6.02 isoform X 1 OS=Populus alba OX=43335 GN=D5086_0000071630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology