Basic Information
Locus ID:
nbisL1-mrna-1385
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000017F_pilon | 2716750 | 2722257 | - | nbisL1-mrna-1385 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 40,206.86 Da | 46.20 | 74.22 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 47 | 117 | 1.20017E-36 | - |
| CDD | cd12354 | RRM3_TIA1_like | 251 | 325 | 1.49887E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 131 | 205 | 1.27617E-51 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 253 | 319 | 1.1E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 132 | 202 | 8.8E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 47 | 113 | 1.3E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 123 | 212 | 2.28E-28 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 33 | 123 | 1.48E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 239 | 323 | 9.64E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 126 | 4.2E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 227 | 327 | 1.8E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 127 | 221 | 2.5E-27 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 131 | 204 | 4.5E-25 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 252 | 321 | 1.6E-16 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 131 | 204 | 0.0055 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 46 | 115 | 2.9E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 45 | 119 | 14.965146 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 130 | 208 | 17.676954 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 251 | 325 | 15.050424 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_030530541.1 | oligouridylate-binding protein 1-like [Rhodamnia argentea] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | B9RR73 | Nucleolysin tia-1, putative OS=Ricinus communis OX=3988 GN=RCOM_0710770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology