Basic Information
Locus ID:
nbisL1-mrna-13837
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000061F_pilon | 1377040 | 1379985 | + | nbisL1-mrna-13837 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 106,214.18 Da | 31.16 | 111.91 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 411 | 467 | 7.6E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 96 | 118 | 0.67 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 144 | 166 | 1.7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 66 | 2.7E-11 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 809 | 976 | 1.9E-34 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 321 | 1.19E-66 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 255 | 564 | 1.02E-57 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 505 | 692 | 4.76E-40 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 781 | 975 | 7.52E-56 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 178 | 272 | 2.7E-27 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 882 | 980 | 2.2E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 380 | 721 | 2.0E-95 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 772 | 881 | 1.6E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 273 | 379 | 3.0E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 177 | 9.0E-43 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 238 | 262 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 94 | 118 | 0.21 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 574 | 598 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 166 | 189 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 142 | 165 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 647 | 670 | 26.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 804 | 981 | 1.6E-8 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 286 | 310 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 382 | 406 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 478 | 502 | 70.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 526 | 550 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 358 | 381 | 66.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 804 | 981 | 30.279987 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 925 | 937 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63930.2 | - | 0 |
| RefSeq | XP_002522030.2 | probable leucine-rich repeat receptor-like protein kinase At5g63930 [Ricinus communis] | 0 |
| Q9LVP0 | Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana OX=3702 GN=At5g63930 PE=1 SV=1 | 0 | |
| TrEMBL | A0A438BRL6 | Putative leucine-rich repeat receptor-like protein kinase OS=Vitis vinifera OX=29760 GN=VvCHDh001197_4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11034, jg19185, jg5843 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11931, gene_18863 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005612, Ah021121 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g077100 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17285, Sbi_jg59600, Sbi_jg61912, Sbi_jg63047 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg23842, Seu_jg539 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015454 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl03032, Sgl08150, Sgl80270, Sgl80304, Sgl82725, Sgl82752 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000011083, gene:ENSEOMG00000015857 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0018110, CQ.Regalona.r1.3BG0018170 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30090530, pistato.v30164110, pistato.v30240540 |
| Apiaceae | Apium graveolens | 3 | Ag2G00059, Ag5G02630, Ag8G01426 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G009270, COCNU_10G007220, COCNU_14G008670 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103710527, gene-LOC103717941, gene-LOC103721290 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.278.V1.1, AsparagusV1_04.279.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri2G30760, Ftri4G19616 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G17230.1, AT2G33170.1, AT5G63930.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10006611m.g.v1.0, Thhalv10016163m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g15370.v2.2, Sp4g15470.v2.2, SpUn0003_0280.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g011130.2N, BniB04g031680.2N, BniB05g054260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0225 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0215 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g00800, gene.Cymno14g03300 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g07430, gene.Thate04g01170, gene.Thate09g11480 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2148, evm.TU.LG11.646 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008414, Pov_00021502 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb3G15945, Lb3G18906, Lb3G20580, Lb5G28184 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.241, AH09.1500, BH03.317, BH09.1685, CH03.379 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0311450, gene-QOZ80_4BG0342710 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0152880.1, HORVU.MOREX.r3.2HG0180110.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_042517, gene-QYE76_045007 |
| Poaceae | Oryza coarctata | 4 | Oco07G010150, Oco08G009980, Oco13G001520, Oco14G001630 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g42700.1, LOC_Os07g05740.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G035200, gene-BS78_06G152900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302182, Pt_Chr0303538 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr23G009270, Chr24G001440, Chr25G010480, Chr26G010420 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G457100, Tel2E01G630400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG033170, gene_TRIDC2AG052150 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G251000.1, TraesCS2A02G360300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb077980_P001, Zm00001eb300100_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37021 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20011, Zma_g5985 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.1051, evm.TU.LG15.982, evm.TU.LG18.1911 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc03g16720, gene.Posoc03g16740, gene.Posoc06g02280 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_2_RagTag.1877, evm.TU.Scaffold_3_RagTag.1336 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15724, nbisL1-mrna-1654, nbisL1-mrna-3268 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-19575, nbisL1-mrna-21142, nbisL1-mrna-3161 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13837, nbisL1-mrna-819 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000009l.167, evm.TU.utg000011l.595 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00001608, Maker00005124, Maker00008095 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21935 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16312, nbisL1-mrna-4343 |
| Salicaceae | Populus euphratica | 4 | populus_peu04027, populus_peu17359, populus_peu19470 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132604352, gene-LOC132609807, gene-LOC132618239 |
| Solanaceae | Solanum chilense | 2 | SOLCI002450000, SOLCI007355800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107005754, gene-LOC107025903, gene-LOC107031481 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5888 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G3147, TC12G0305 |
| Zosteraceae | Zostera marina | 1 | Zosma05g29700.v3.1 |