Basic Information
Locus ID:
nbisL1-mrna-13821
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000061F_pilon | 1271464 | 1275963 | - | nbisL1-mrna-13821 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 44,428.96 Da | 49.52 | 91.60 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16451 | mRING_PEX12 | 339 | 380 | 8.12143E-21 | - |
| Pfam | PF04757 | Pex2 / Pex12 amino terminal region | 21 | 303 | 2.8E-47 | IPR006845 |
| SUPERFAMILY | SSF57850 | RING/U-box | 338 | 389 | 1.11E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 325 | 391 | 3.3E-7 | IPR013083 |
| PIRSF | PIRSF038074 | Peroxin-12 | 1 | 393 | 7.5E-147 | IPR017375 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04460.1 | peroxin-12. RING finger protein involved in peroxisome biogenesis. Also involved in peroxisomal import of nitric oxide synthase. | 0 |
| RefSeq | XP_034898088.1 | peroxisome biogenesis protein 12-like isoform X1 [Populus alba] | 0 |
| Q9M841 | Peroxisome biogenesis protein 12 OS=Arabidopsis thaliana OX=3702 GN=PEX12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2JYJ3 | Peroxisome biogenesis protein 12 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9902 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9930 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006390 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g084020 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16568, Sbi_jg61084 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22837 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008114, GOSA_00008115 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24970, Sgl30118 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010512, gene:ENSEOMG00000028287 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0011740 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30090920, pistato.v30091300 |
| Apiaceae | Apium graveolens | 1 | AgUnG00421 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G001210, COCNU_10G000900 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703898, gene-LOC120107870 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1901.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G10588 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G04460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020878m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g03310.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g033710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1656 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1715 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g04260 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0098s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g06900 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2185 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040086 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G21775 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1816, BH01.2146, CH01.2224 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127390, gene-QOZ80_2BG0182870 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0041250.1 |
| Poaceae | Oryza coarctata | 2 | Oco19G005750, Oco20G005630 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g32960.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G210400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502544 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G010670, Chr0G026010, Chr13G014500 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G277400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG022710, gene_TRIDC1BG027580 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G149100.1, TraesCS1B02G167000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb046420_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21205 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13361 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1317, evm.TU.LG20.1314 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g01550 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1894 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3296 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3172 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13821 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.158 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005012 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12880 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16298 |
| Salicaceae | Populus euphratica | 2 | populus_peu15989, populus_peu19516 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640149 |
| Solanaceae | Solanum chilense | 1 | SOLCI000213600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018687 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4924 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3362 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38350.v3.1 |