Basic Information
Locus ID:
nbisL1-mrna-13804
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001346F_pilon | 742733 | 747444 | - | nbisL1-mrna-13804 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 124,969.33 Da | 38.27 | 90.91 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 497 | 762 | 2.57397E-89 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 120 | 138 | 0.19 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 195 | 254 | 6.7E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 494 | 757 | 3.0E-38 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 3 | 43 | 5.6E-7 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 42 | 374 | 1.33E-59 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 495 | 763 | 4.59E-60 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 4 | 158 | 9.2E-40 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 497 | 568 | 1.2E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 569 | 783 | 1.1E-49 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 258 | 384 | 7.4E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 159 | 257 | 4.8E-26 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 241 | 264 | 8.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 337 | 361 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 118 | 141 | 300.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 93 | 117 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 265 | 289 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 217 | 240 | 180.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 491 | 766 | 35.184486 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 241 | 254 | 6.0E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 120 | 133 | 6.0E-6 | - |
| PRINTS | PR02051 | Protein family FAM175 signature | 904 | 923 | 2.3E-18 | IPR023238 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 1099 | 1125 | 1.9E-41 | IPR023241 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 829 | 850 | 1.9E-41 | IPR023241 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 1076 | 1096 | 1.9E-41 | IPR023241 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 1021 | 1041 | 1.9E-41 | IPR023241 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 984 | 1004 | 1.9E-41 | IPR023241 |
| PRINTS | PR02051 | Protein family FAM175 signature | 1013 | 1027 | 2.3E-18 | IPR023238 |
| PRINTS | PR02051 | Protein family FAM175 signature | 839 | 857 | 2.3E-18 | IPR023238 |
| PRINTS | PR02051 | Protein family FAM175 signature | 859 | 876 | 2.3E-18 | IPR023238 |
| PRINTS | PR02051 | Protein family FAM175 signature | 933 | 949 | 2.3E-18 | IPR023238 |
| Coils | Coil | Coil | 1102 | 1129 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51740.1 | inflorescence meristem receptor-like kinase 2. encodes a leucine-repeat receptor kinase expressed in inflorescence meristem. Locus association was made from performing sequence analysis with IMK3 (MRLK) whose locus association was provided by the authors. | 0 |
| RefSeq | XP_021908794.1 | LOW QUALITY PROTEIN: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Carica papaya] | 0 |
| Q9SCT4 | Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana OX=3702 GN=IMK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A314Z218 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3224 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2290 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003224 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24303, Sbi_jg8133 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11889 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010970 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52487, Sgl57779 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004244, gene:ENSEOMG00000023922 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0010730, CQ.Regalona.r1.5BG0011250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30267860 |
| Apiaceae | Apium graveolens | 1 | Ag5G01639 |
| Arecaceae | Cocos nucifera | 1 | contig69363059G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708924 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3387.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G08780.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021171m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07200.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g055770.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0957 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0975 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g01650 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1267s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g02180 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5508 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.950 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006944 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09140 |
| Poaceae | Echinochloa crus-galli | 6 | AH04.43, AH05.67, BH04.52, CH04.170, CH05.19, CH07.1608 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0313470, gene-QOZ80_5AG0378790 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0175640.1, HORVU.MOREX.r3.5HG0465240.1 |
| Poaceae | Oryza coarctata | 3 | Oco07G008650, Oco08G008590, Oco14G009750 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g40320.1, LOC_Os07g35600.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G007600, gene-BS78_07G038600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0302349, Pt_Chr0702856, Pt_Chr0705237 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G008210, Chr0G006540, Chr16G008140, Chr19G011470 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G587700, Tel5E01G261300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG049230, gene_TRIDC2BG051720 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G382300.1, TraesCS1B02G407600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb163300_P001, Zm00001eb421620_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25831, nbis-gene-26958 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18330, Zma_g24606 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2805, evm.TU.LG16.856 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g09210 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1869, evm.TU.Scaffold_2_RagTag.583 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5633 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10320, nbisL1-mrna-1349 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3660, nbisL1-mrna-9611 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.991, evm.TU.utg000016l.730 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005233, Maker00017133 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2660, nbisL1-mrna-4921 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13804, nbisL1-mrna-16661 |
| Salicaceae | Populus euphratica | 1 | populus_peu25374 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630928 |
| Solanaceae | Solanum chilense | 1 | SOLCI003291200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029242 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24955_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2756 |
| Zosteraceae | Zostera marina | 1 | Zosma01g17730.v3.1 |