Basic Information
Locus ID:
nbisL1-mrna-13778
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000061F_pilon | 1028196 | 1030052 | + | nbisL1-mrna-13778 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 23,664.45 Da | 28.35 | 66.39 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 19 | 219 | 4.6E-67 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 130 | 219 | 5.98E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 128 | 219 | 1.2E-32 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 133 | 219 | 21.02627 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 47 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_002319075.1 | auxin-responsive protein IAA16 [Populus trichocarpa] | 0 |
| O24407 | Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JUV0 | Auxin-responsive protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology