Basic Information
Locus ID:
nbisL1-mrna-13742
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 12410104 | 12413485 | + | nbisL1-mrna-13742 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 113,675.98 Da | 39.16 | 103.10 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 506 | 566 | 1.7E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 697 | 976 | 1.2E-48 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 73 | 2.6E-5 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 238 | 281 | 9.9E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 100 | 160 | 2.6E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 46 | 381 | 4.42E-61 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 687 | 978 | 3.64E-74 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 293 | 625 | 3.69E-47 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 186 | 1.7E-43 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 391 | 628 | 7.6E-56 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 292 | 390 | 1.4E-23 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 775 | 1000 | 1.5E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 187 | 291 | 2.9E-26 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 678 | 774 | 1.3E-19 | - |
| SMART | SM00220 | serkin_6 | 695 | 982 | 1.7E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 315 | 339 | 59.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 99 | 123 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 171 | 195 | 82.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 553 | 577 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 147 | 170 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 244 | 267 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 268 | 292 | 47.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 505 | 529 | 46.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 695 | 982 | 37.71447 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 701 | 725 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 830 | 842 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_012077398.1 | receptor-like protein kinase HSL1 [Jatropha curcas] | 0 |
| P47735 | Receptor-like protein kinase 5 OS=Arabidopsis thaliana OX=3702 GN=RLK5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2NFR4 | Serine-threonine protein kinase plant-type OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology