HalophFGD

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Basic Information
Locus ID: nbisL1-mrna-13710
Species & Taxonomic ID: Ceriops zippeliana & 413951
Genome Assembly: GCA_037897445.1
Description: F-box kelch-repeat protein At1g57790-like
Maps and Mapping Data
Chromosome Start End Strand ID
000061F_pilon 609001 611132 + nbisL1-mrna-13710
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.56 17,361.24 Da 40.24 87.17 -0.34
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 109 136 1.1E-4 IPR001810
SUPERFAMILY SSF81383 F-box domain 104 143 8.5E-6 IPR036047
Gene3D G3DSA:1.20.1280.50 - 104 144 3.1E-8 -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_024189359.1 F-box/kelch-repeat protein At1g57790 isoform X2 [Rosa chinensis] 0
TrEMBL A0A2P6R6V0 Putative F-box domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0454581 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Apiaceae Apium graveolens 4 Ag11G04177, Ag4G02090, Ag8G00526, Ag9G00673
Nitrariaceae Nitraria sibirica 1 evm.TU.LG12.961
Plantaginaceae Plantago ovata 1 Pov_00014702
Posidoniaceae Posidonia oceanica 1 gene.Posoc08g13350
Rhizophoraceae Ceriops zippeliana 1 nbisL1-mrna-13710
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.