Basic Information
Locus ID:
nbisL1-mrna-1371
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 11381283 | 11384671 | - | nbisL1-mrna-1371 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 108,162.31 Da | 33.73 | 102.44 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 457 | 516 | 8.5E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 695 | 966 | 1.5E-42 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 68 | 3.4E-6 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 529 | 588 | 3.2E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 242 | 264 | 0.89 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 305 | 624 | 3.4E-54 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 690 | 969 | 5.66E-72 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 76 | 398 | 2.51E-57 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 771 | 977 | 1.8E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 228 | 333 | 1.2E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 335 | 622 | 5.1E-83 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 141 | 1.9E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 142 | 227 | 2.7E-20 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 666 | 770 | 3.9E-22 | - |
| SMART | SM00220 | serkin_6 | 694 | 969 | 2.0E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 694 | 981 | 37.912346 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 815 | 827 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_039008823.1 | receptor protein kinase CLAVATA1-like [Hibiscus syriacus] | 0 |
| Q9SYQ8 | Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana OX=3702 GN=CLV1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6A2ZXV9 | Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110646pilonHSYRG00093 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology