Basic Information
Locus ID:
nbisL1-mrna-13705
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000061F_pilon | 577846 | 580789 | - | nbisL1-mrna-13705 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 43,489.68 Da | 60.07 | 71.28 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 337 | 377 | 1.49933E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 336 | 382 | 8.6E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 332 | 383 | 1.23E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 322 | 387 | 4.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 338 | 376 | 5.7E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 320 | 388 | 2.1E-9 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 2 | 102 | 250.0 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 338 | 377 | 11.722122 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 36 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021684009.1 | probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Hevea brasiliensis] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A200PXQ7 | RING-type E3 ubiquitin transferase OS=Macleaya cordata OX=56857 GN=BVC80_8755g12 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology