Basic Information
Locus ID:
nbisL1-mrna-13690
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 11865116 | 11868112 | + | nbisL1-mrna-13690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 77,950.63 Da | 34.12 | 89.86 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 178 | 224 | 5.4E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 152 | 175 | 0.022 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 76 | 123 | 4.9E-9 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 381 | 428 | 3.0E-12 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 283 | 310 | 0.0012 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 556 | 685 | 4.4E-30 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 457 | 481 | 0.27 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 7 | 128 | 1.6E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 450 | 627 | 1.0E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 243 | 346 | 2.7E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 129 | 242 | 1.4E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 347 | 449 | 1.2E-22 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 180 | 214 | 1.2E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 283 | 316 | 3.9E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 50 | 79 | 1.5E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 384 | 417 | 3.6E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 178 | 212 | 11.706726 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 46 | 80 | 10.05157 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 382 | 416 | 11.816339 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 351 | 381 | 8.527949 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 281 | 315 | 9.755614 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15130.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_002309575.2 | putative pentatricopeptide repeat-containing protein At3g15130 [Populus trichocarpa] | 0 |
| P0C898 | Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H86 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8T2YGP0 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17827 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031897 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g043850 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30324, Sbi_jg43743 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18166 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028084 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71252, Sgl74824 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015971, gene:ENSEOMG00000020746 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0001480, CQ.Regalona.r1.2BG0002540 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253240 |
| Apiaceae | Apium graveolens | 2 | Ag10G01959, Ag6G02468 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G15130.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022068m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g13340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g028090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2134 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2339 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g04800 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1361 |
| Poaceae | Echinochloa crus-galli | 2 | AH09.2784, BH09.3020 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0298630, gene-QOZ80_4BG0329330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0214790.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064732 |
| Poaceae | Oryza coarctata | 1 | Oco08G019110 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g58980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G292000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300539 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G000390, Chr26G018800 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G995500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG080060, gene_TRIDC2BG088150 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G577500.1.cds1, TraesCS2B02G609900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb076040_P001 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2552, evm.TU.LG17.1594 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.793 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13690 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11913 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9042 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000004l.52 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18266 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7922 |
| Salicaceae | Populus euphratica | 1 | populus_peu12798 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602789 |
| Solanaceae | Solanum chilense | 1 | SOLCI001403200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024509 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3798 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1671 |
| Zosteraceae | Zostera marina | 1 | Zosma02g01630.v3.1 |