Basic Information
Locus ID:
nbisL1-mrna-13689
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
C4-type zinc-finger of DNA polymerase delta
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000061F_pilon | 480562 | 484849 | + | nbisL1-mrna-13689 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 92,373.69 Da | 51.79 | 58.35 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 369 | 397 | 4.3E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 403 | 430 | 1.6E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 362 | 398 | 4.32E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 400 | 432 | 1.3E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 361 | 399 | 1.0E-15 | - |
| SMART | SM00547 | zf_4 | 371 | 395 | 6.8E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 404 | 428 | 0.015 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 369 | 398 | 10.048569 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 402 | 431 | 9.269407 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 406 | 425 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 373 | 392 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 791 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 736 | 756 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 714 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_052302205.1 | uncharacterized protein LOC7473293 isoform X6 [Populus trichocarpa] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2IUY3 | DNA polymerase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology