halophFGD

Basic Information

Locus ID: nbisL1-mrna-13687

Species & Taxonomic ID: Rhizophora mangle & 40031

Genome Assembly: GCA_037832345.1

Description: Protein RETICULATA-related

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
001346F_pilon	62071	65845	+	nbisL1-mrna-13687

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.82	45,030.26 Da	41.87	87.54	0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF11891	Protein RETICULATA-related	208	372	7.6E-52	IPR021825

Best hit

Source	Best Hit ID	Description
TAIR	AT2G37860.3	Protein of unknown function (DUF3411). Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringae
RefSeq	XP_021623091.1	protein RETICULATA, chloroplastic [Manihot esculenta]
Swiss-Prot	B9DFK5	Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=1
TrEMBL	A0A2C9V9C7	Protein RETICULATA-RELATED 1, chloroplastic-like OS=Manihot esculenta OX=3983 GN=MANES_09G097000 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg14831, jg35958
Aizoaceae	Mesembryanthemum crystallinum	2	gene_2033, gene_26044
Amaranthaceae	Atriplex hortensis	2	Ah011504, Ah032102
Amaranthaceae	Beta vulgaris	2	BVRB_2g038900, BVRB_9g210850
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg11910, Sbi_jg30118, Sbi_jg43572, Sbi_jg46855
Amaranthaceae	Salicornia europaea	2	Seu_jg18329, Seu_jg21150
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004094, GOSA_00009476
Amaranthaceae	Suaeda glauca	4	Sgl66081, Sgl70396, Sgl80328, Sgl82797
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000015790, gene:ENSEOMG00000017081 ... gene:ENSEOMG00000020430, gene:ENSEOMG00000038670, gene:ENSEOMG00000048442, gene:ENSEOMG00000052492
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0002960, CQ.Regalona.r1.2BG0004120 ... CQ.Regalona.r1.9AG0010560, CQ.Regalona.r1.9BG0011890
Anacardiaceae	Pistacia vera	3	pistato.v30057300, pistato.v30064710, pistato.v30284800
Apiaceae	Apium graveolens	2	Ag5G02365, Ag7G01201
Arecaceae	Cocos nucifera	2	COCNU_10G010350, COCNU_16G008470
Arecaceae	Phoenix dactylifera	3	gene-LOC103713015, gene-LOC103722547, gene-LOC113460985
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.83.V1.1, AsparagusV1_04.539.V1.1 ... AsparagusV1_08.1254.V1.1
Asteraceae	Flaveria trinervia	1	Ftri17G13170
Brassicaceae	Arabidopsis thaliana	2	AT2G37860.3, AT5G22790.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10013586m.g.v1.0, Thhalv10016685m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g20170.v2.2, Sp6g22640.v2.2
Brassicaceae	Brassica nigra	4	BniB02g040920.2N, BniB04g046180.2N, BniB06g006700.2N ... BniB08g011390.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq05G1713, Ceq08G1101
Casuarinaceae	Casuarina glauca	2	Cgl05G1715, Cgl08G1126
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g12720, gene.Cymno08g00550
Dunaliellaceae	Dunaliella salina	1	Dusal.0915s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g06660, gene.Thate08g24570
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8633
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1132, evm.TU.LG09.776
Plantaginaceae	Plantago ovata	2	Pov_00002852, Pov_00015869
Plumbaginaceae	Limonium bicolor	2	Lb2G09351, Lb3G19927
Poaceae	Echinochloa crus-galli	7	AH03.685, AH09.1620, BH03.807, BH09.1816, CH03.901 ... CH04.2563, CH09.1946
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_4AG0310070, gene-QOZ80_4BG0341250 ... gene-QOZ80_7AG0561470, gene-QOZ80_7BG0594710
Poaceae	Lolium multiflorum	2	gene-QYE76_041837, gene-QYE76_045151
Poaceae	Oryza coarctata	2	Oco13G004310, Oco14G004970
Poaceae	Oryza sativa	4	LOC_Os03g27340.1, LOC_Os04g44290.1, LOC_Os07g13590.1 ... LOC_Os11g24500.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G108200, gene-BS78_06G163700
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0302047, Pt_Chr0303912, Pt_Chr0306767
Poaceae	Sporobolus alterniflorus	4	Chr24G004220, Chr25G006940, Chr28G003660, Chr30G006850
Poaceae	Thinopyrum elongatum	2	Tel2E01G447500, Tel2E01G650300
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG031640, gene_TRIDC2AG054620 ... gene_TRIDC2BG036440, gene_TRIDC2BG057350
Poaceae	Triticum aestivum	6	TraesCS2A02G234300.1, TraesCS2A02G377800.1 ... TraesCS2B02G261500.1, TraesCS2B02G394800.1, TraesCS2D02G241700.1, TraesCS2D02G374200.1
Poaceae	Zea mays	2	Zm00001eb076950_P003, Zm00001eb303990_P001
Poaceae	Zoysia japonica	2	nbis-gene-26583, nbis-gene-37118
Poaceae	Zoysia macrostachya	3	Zma_g20077, Zma_g4948, Zma_g6213
Portulacaceae	Portulaca oleracea	2	evm.TU.LG10.851, evm.TU.LG17.853
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g01990
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_12_RagTag.595, evm.TU.Scaffold_1_RagTag.1723
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-24132, nbisL1-mrna-5516, nbisL1-mrna-5518
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-1453, nbisL1-mrna-16362
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-19826, nbisL1-mrna-3768
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000016l.641, evm.TU.utg000027l.200
Rhizophoraceae	Kandelia obovata	2	Maker00016264, Maker00018072
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-5010, nbisL1-mrna-5779
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-12071, nbisL1-mrna-13687
Salicaceae	Populus euphratica	3	populus_peu21964, populus_peu21975, populus_peu36787
Solanaceae	Lycium barbarum	2	gene-LOC132600514, gene-LOC132630508
Solanaceae	Solanum chilense	2	SOLCI002623600, SOLCI005692000
Solanaceae	Solanum pennellii	2	gene-LOC107003233, gene-LOC107031515
Tamaricaceae	Reaumuria soongarica	2	STRG.3101_chr01_+, gene_8601
Tamaricaceae	Tamarix chinensis	2	TC03G1866, TC07G0395
Zosteraceae	Zostera marina	1	Zosma05g29460.v3.1