Basic Information
Locus ID:
nbisL1-mrna-13665
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000061F_pilon | 328469 | 337897 | - | nbisL1-mrna-13665 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 125,108.78 Da | 39.46 | 81.37 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 452 | 486 | 0.0086 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 837 | 1097 | 1.58E-35 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 329 | 660 | 9.77E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 966 | 1121 | 1.4E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 753 | 965 | 4.0E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 541 | 684 | 2.5E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 303 | 540 | 5.1E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1064 | 1096 | 49.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 867 | 907 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 828 | 864 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 378 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 488 | 529 | 0.026 | IPR001680 |
| SMART | SM00320 | WD40_4 | 578 | 619 | 4.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 910 | 949 | 0.0088 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 439 | 14.0 | IPR001680 |
| SMART | SM00668 | ctlh | 39 | 97 | 5.7E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 999 | 1041 | 23.0 | IPR001680 |
| SMART | SM00667 | Lish | 9 | 41 | 0.0014 | IPR006594 |
| SMART | SM00320 | WD40_4 | 445 | 486 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 532 | 575 | 100.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 917 | 952 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 597 | 628 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 917 | 958 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 39 | 97 | 13.501994 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 345 | 387 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 41 | 9.614444 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1113 | 1135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1098 | 1135 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021645875.1 | topless-related protein 3-like [Hevea brasiliensis] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MSJ5 | Topless-related protein 3 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology