Basic Information
Locus ID:
nbisL1-mrna-13627
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
EBF2
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 11310229 | 11314761 | - | nbisL1-mrna-13627 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 69,962.60 Da | 46.92 | 110.02 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 575 | 592 | 0.18 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 226 | 249 | 0.006 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 251 | 274 | 0.16 | IPR001611 |
| Pfam | PF12937 | F-box-like | 68 | 102 | 7.2E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 346 | 651 | 1.26E-27 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 63 | 104 | 8.63E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 186 | 428 | 9.16E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 456 | 655 | 5.5E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 60 | 303 | 3.9E-37 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 304 | 455 | 2.9E-18 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 544 | 569 | 0.23 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 226 | 251 | 1.5E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 570 | 594 | 2.9 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 490 | 515 | 0.019 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 464 | 489 | 3.0E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 517 | 542 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 278 | 303 | 0.022 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 358 | 383 | 0.14 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 252 | 277 | 0.0021 | IPR006553 |
| SMART | SM00256 | fbox_2 | 70 | 111 | 2.2E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 596 | 621 | 0.015 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 410 | 435 | 180.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 200 | 225 | 0.0052 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 384 | 409 | 0.033 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_021665595.1 | EIN3-binding F-box protein 1-like [Hevea brasiliensis] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K6Y0 | Grr1 plant OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology