Basic Information
Locus ID:
nbisL1-mrna-13624
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001378F_pilon | 2629636 | 2638793 | - | nbisL1-mrna-13624 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 95,745.07 Da | 44.61 | 80.70 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 468 | 512 | 2.7E-14 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 260 | 314 | 3.0E-12 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 751 | 836 | 1.8E-9 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 525 | 570 | 2.67E-13 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 586 | 652 | 3.5E-6 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 696 | 859 | 2.9E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 521 | 573 | 1.2E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 593 | 655 | 1.2E-9 | IPR013083 |
| SMART | SM00249 | PHD_3 | 596 | 653 | 0.035 | IPR001965 |
| SMART | SM00249 | PHD_3 | 529 | 570 | 2.1E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 527 | 572 | 10.0151 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 702 | 862 | 10.152823 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 594 | 655 | 8.6623 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 530 | 569 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 597 | 652 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 428 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021650718.1 | uncharacterized protein LOC110642847 [Hevea brasiliensis] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067KHI8 | PHD-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_09035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology