Basic Information
Locus ID:
nbisL1-mrna-13613
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
CPK24
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 11831312 | 11835434 | + | nbisL1-mrna-13613 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 51,815.41 Da | 38.77 | 76.82 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 34 | 267 | 6.11616E-101 | - |
| Pfam | PF00036 | EF hand | 250 | 276 | 3.0E-6 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 329 | 384 | 1.2E-7 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 35 | 264 | 2.5E-60 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 32 | 252 | 2.97E-67 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 233 | 384 | 6.87E-34 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 255 | 310 | 2.1E-11 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 311 | 423 | 4.9E-13 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 121 | 254 | 6.5E-39 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 37 | 120 | 6.8E-24 | - |
| SMART | SM00054 | efh_1 | 321 | 349 | 6.4 | IPR002048 |
| SMART | SM00054 | efh_1 | 358 | 386 | 1.8 | IPR002048 |
| SMART | SM00054 | efh_1 | 249 | 277 | 7.6E-6 | IPR002048 |
| SMART | SM00220 | serkin_6 | 35 | 307 | 3.0E-66 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 354 | 389 | 10.859108 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 245 | 280 | 14.06708 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 35 | 315 | 40.654343 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 317 | 352 | 9.018011 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 258 | 270 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 155 | 167 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 330 | 342 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 29 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31500.1 | calcium-dependent protein kinase 24. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_021610820.1 | calcium-dependent protein kinase 24 [Manihot esculenta] | 0 |
| Q9SIQ7 | Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=CPK24 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9W1W7 | Calcium-dependent protein kinase 24 OS=Manihot esculenta OX=3983 GN=MANES_04G041600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah039308 |
| Apiaceae | Apium graveolens | 2 | Ag1G00989, Ag2G00231 |
| Brassicaceae | Brassica nigra | 1 | BniB02g027910.2N |
| Poaceae | Zea mays | 3 | Zm00001eb016070_P001, Zm00001eb024950_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-1403, nbis-gene-38648 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16587 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-931 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13613, nbisL1-mrna-18710 |
| Salicaceae | Populus euphratica | 1 | populus_peu24041 |