Basic Information
Locus ID:
nbisL1-mrna-13612
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000224F_pilon | 4749909 | 4755473 | - | nbisL1-mrna-13612 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 90,992.85 Da | 43.53 | 80.28 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 18 | 188 | 1.0334E-54 | - |
| Pfam | PF00069 | Protein kinase domain | 503 | 758 | 1.6E-40 | IPR000719 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 18 | 185 | 1.51E-8 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 481 | 759 | 1.32E-69 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 574 | 778 | 6.1E-49 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 18 | 185 | 1.7E-9 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 468 | 573 | 4.3E-25 | - |
| SMART | SM00220 | serkin_6 | 501 | 770 | 8.5E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 501 | 777 | 36.032524 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 619 | 631 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 824 | - | - |
| Coils | Coil | Coil | 429 | 449 | - | - |
| Coils | Coil | Coil | 369 | 389 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78940.3 | - | 0 |
| RefSeq | XP_021681652.1 | U-box domain-containing protein 52-like [Hevea brasiliensis] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067JYF2 | Protein kinase domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_22570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology