Basic Information
Locus ID:
nbisL1-mrna-13610
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 11164314 | 11168446 | - | nbisL1-mrna-13610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 59,976.71 Da | 25.21 | 103.02 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 414 | 514 | 1.07664E-26 | - |
| CDD | cd00030 | C2 | 240 | 342 | 1.18036E-24 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 37 | 224 | 2.5E-11 | IPR039010 |
| Pfam | PF00168 | C2 domain | 412 | 514 | 2.7E-25 | IPR000008 |
| Pfam | PF00168 | C2 domain | 239 | 342 | 4.0E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 236 | 367 | 3.99E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 408 | 531 | 7.26E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 397 | 530 | 7.4E-35 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 231 | 367 | 4.0E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 413 | 511 | 1.6E-23 | IPR000008 |
| SMART | SM00239 | C2_3c | 239 | 339 | 1.1E-20 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 394 | 512 | 21.39382 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 219 | 340 | 19.831446 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 32 | 225 | 26.436209 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 455 | 468 | 3.2E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 477 | 485 | 3.2E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 429 | 441 | 3.2E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021691209.1 | synaptotagmin-4-like isoform X1 [Hevea brasiliensis] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067KEY0 | Synaptotagmin-5 OS=Jatropha curcas OX=180498 GN=JCGZ_07139 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology