Basic Information
Locus ID:
nbisL1-mrna-1358
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000150F_pilon | 5597640 | 5599102 | + | nbisL1-mrna-1358 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 39,666.83 Da | 57.47 | 81.86 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 285 | 324 | 1.6E-7 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 71 | 3.43E-7 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 279 | 328 | 5.76E-9 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 81 | 202 | 2.49E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 275 | 330 | 9.6E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 68 | 218 | 2.4E-15 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 282 | 324 | 10.971794 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_002511186.1 | F-box protein At1g67340 [Ricinus communis] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2QN35 | MYND-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology