Basic Information
Locus ID:
nbisL1-mrna-13577
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 10761358 | 10769702 | - | nbisL1-mrna-13577 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 101,303.52 Da | 41.34 | 68.05 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 664 | 707 | 0.0041113 | IPR002999 |
| SUPERFAMILY | SSF48371 | ARM repeat | 49 | 258 | 2.16E-8 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 661 | 703 | 2.78E-7 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 651 | 710 | 1.3E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 569 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 908 | 922 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 888 | 907 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 715 | 934 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 744 | 759 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 763 | 804 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 853 | 887 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 815 | 852 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_021686080.1 | serine/arginine repetitive matrix protein 2-like isoform X1 [Hevea brasiliensis] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LRD6 | Tudor domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology