Basic Information
Locus ID:
nbisL1-mrna-13562
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001378F_pilon | 2286593 | 2291834 | + | nbisL1-mrna-13562 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 44,665.93 Da | 44.04 | 84.07 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04133 | Vacuolar protein sorting 55 | 316 | 392 | 7.3E-11 | IPR007262 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 14 | 299 | 7.5E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 187 | 7.5E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 188 | 308 | 1.9E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 107 | 152 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 191 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 216 | 256 | 0.0011 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 223 | 256 | 9.439068 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_021289421.1 | WD repeat-containing protein LWD1-like [Herrania umbratica] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A498I5F9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology