Basic Information
Locus ID:
nbisL1-mrna-13549
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Bromodomain and WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 11223798 | 11236201 | + | nbisL1-mrna-13549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 202,366.64 Da | 49.79 | 70.22 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 335 | 711 | 1.50884E-55 | - |
| CDD | cd05529 | Bromo_WDR9_I_like | 1679 | 1805 | 1.29472E-45 | - |
| Pfam | PF00439 | Bromodomain | 1737 | 1786 | 3.2E-7 | IPR001487 |
| Pfam | PF00400 | WD domain, G-beta repeat | 419 | 458 | 5.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 672 | 711 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 334 | 371 | 1.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 490 | 520 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 377 | 412 | 7.8E-7 | IPR001680 |
| SUPERFAMILY | SSF47370 | Bromodomain | 1706 | 1801 | 6.54E-9 | IPR036427 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 330 | 755 | 1.83E-67 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 487 | 623 | 3.8E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 308 | 486 | 1.1E-41 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 633 | 767 | 1.2E-18 | IPR015943 |
| Gene3D | G3DSA:1.20.920.10 | - | 1692 | 1805 | 9.3E-8 | IPR036427 |
| SMART | SM00320 | WD40_4 | 630 | 668 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 671 | 711 | 7.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 481 | 520 | 3.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 371 | 4.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 532 | 597 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 416 | 458 | 7.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 413 | 3.3E-9 | IPR001680 |
| SMART | SM00297 | bromo_6 | 1696 | 1804 | 0.0099 | IPR001487 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 339 | 380 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 339 | 374 | 11.444681 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 678 | 712 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50014 | Bromodomain profile. | 1738 | 1788 | 8.5796 | IPR001487 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 488 | 520 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 381 | 414 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 423 | 467 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 381 | 422 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 423 | 461 | 11.260138 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 445 | 459 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 698 | 712 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1036 | 1063 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 920 | 957 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 881 | 986 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1004 | 1065 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 893 | 913 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49430.1 | WD40/YVTN repeat-like-containing domain;Bromodomain. | 0 |
| RefSeq | XP_021637124.1 | uncharacterized protein LOC110633006 isoform X1 [Hevea brasiliensis] | 0 |
| Q8WWQ0 | PH-interacting protein OS=Homo sapiens OX=9606 GN=PHIP PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2XTF0 | Bromo domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_019232 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28097, jg8963 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15914, gene_19270 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah000116, Ah005387, Ah019107 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g053860, BVRB_5g121730 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg31345, Sbi_jg38015, Sbi_jg57938, Sbi_jg6158 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15688, Seu_jg25570 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004459, GOSA_00006203 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl00853, Sgl00979, Sgl05807, Sgl05934, Sgl54504, Sgl59846 |
| Amaranthaceae | Chenopodium album | 9 | gene:ENSEOMG00000002379, gene:ENSEOMG00000006720 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0001370, CQ.Regalona.r1.5AG0026920 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30008210, pistato.v30233390 |
| Apiaceae | Apium graveolens | 2 | Ag10G01785, Ag9G01903 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G010880, COCNU_16G004500 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103700969, gene-LOC103704651 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.509.V1.1, AsparagusV1_07.1239.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri16G27310, Ftri9G14619, Ftri9G25088, Ftri9G27926 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G47410.1, AT5G49430.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001281m.g.v1.0, Thhalv10003509m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g19760.v2.2, Sp4g29360.v2.2, SpUn0021_0090.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g000380.2N, BniB02g070300.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1042, Ceq09G1057 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G1083, Cgl09G1146 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g18160, gene.Cymno03g02430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1122s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g03740 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5467 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.442, evm.TU.LG11.1211 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00024935, Pov_00026037 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G03024, Lb3G21236, Lb4G25035 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3887, BH01.4223, CH01.4512 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0245380 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0382540.1, HORVU.MOREX.r3.5HG0421410.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_047797, gene-QYE76_068476 |
| Poaceae | Oryza coarctata | 2 | Oco05G011500, Oco06G014900 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g19340.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G379400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102553, Pt_Chr0102562 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G032800, Chr04G009470, Chr07G002220, Chr12G006770 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G331000, Tel5E01G033100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG017220, gene_TRIDC5AG002290 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3D02G059100.1, TraesCS4A02G120400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb336210_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1852 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1377 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2938, evm.TU.LG16.1177, evm.TU.LG20.1375 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g07310 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.642, evm.TU.Scaffold_5_RagTag.793 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-11542, nbisL1-mrna-1330, nbisL1-mrna-1331 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-13248, nbisL1-mrna-18438, nbisL1-mrna-5713 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-1011, nbisL1-mrna-11432, nbisL1-mrna-6335 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000006l.566, evm.TU.utg000011l.753 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00007778, Maker00012656, Maker00013140 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10116, nbisL1-mrna-13549, nbisL1-mrna-5293 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13081, nbisL1-mrna-4075, nbisL1-mrna-7426 |
| Salicaceae | Populus euphratica | 3 | populus_peu06914, populus_peu20850, populus_peu27344 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132626613, gene-LOC132644942 |
| Solanaceae | Solanum chilense | 2 | SOLCI002432100, SOLCI003714300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007765, gene-LOC107032559 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_16456, gene_5290 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G1402, TC07G2749 |
| Zosteraceae | Zostera marina | 1 | Zosma04g25280.v3.1 |