Basic Information
Locus ID:
nbisL1-mrna-13547
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 11200938 | 11203094 | + | nbisL1-mrna-13547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.46 | 51,619.62 Da | 51.21 | 58.06 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 416 | 447 | 2.1E-6 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 315 | 399 | 8.9E-20 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 315 | 400 | 9.3E-30 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 207 | - | - |
| Coils | Coil | Coil | 314 | 341 | - | - |
| Coils | Coil | Coil | 353 | 380 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06660.1 | PAPA-1-like family protein / zinc finger (HIT type) family protein. | 0 |
| RefSeq | XP_002519215.1 | uncharacterized protein LOC8258805 [Ricinus communis] | 0 |
| TrEMBL | A0A2P2KQ66 | Protein binding protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology