Basic Information
Locus ID:
nbisL1-mrna-13532
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 10267717 | 10274016 | - | nbisL1-mrna-13532 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 79,632.35 Da | 47.14 | 77.39 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 229 | 485 | 4.1E-28 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 190 | 221 | 2.0E-5 | IPR001394 |
| Pfam | PF01753 | MYND finger | 83 | 120 | 3.0E-10 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 183 | 487 | 5.47E-73 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 81 | 124 | 1.24E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 70 | 125 | 4.6E-15 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 163 | 229 | 2.4E-9 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 230 | 490 | 9.9E-63 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 190 | 488 | 37.742878 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 83 | 120 | 12.492804 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 83 | 120 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 191 | 206 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_021597597.1 | ubiquitin carboxyl-terminal hydrolase 18 isoform X1 [Manihot esculenta] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A067KNS9 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Jatropha curcas OX=180498 GN=JCGZ_07040 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology