Basic Information
Locus ID:
nbisL1-mrna-13510
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
RHC1A
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000224F_pilon | 4093439 | 4094257 | + | nbisL1-mrna-13510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 30,402.58 Da | 62.15 | 60.92 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 178 | 219 | 5.29192E-25 | - |
| Pfam | PF13639 | Ring finger domain | 177 | 219 | 4.5E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 6 | 37 | 6.9E-10 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 225 | 1.1E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 225 | 9.1E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 178 | 218 | 3.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 178 | 219 | 12.533537 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 248 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_034919986.1 | probable E3 ubiquitin-protein ligase RHC1A [Populus alba] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JMP4 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology