Basic Information
Locus ID:
nbisL1-mrna-13490
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Lymphoid organ expressed yellow head virus receptor protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001378F_pilon | 1854666 | 1857821 | - | nbisL1-mrna-13490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.63 | 50,892.08 Da | 48.60 | 57.87 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06886 | Targeting protein for Xklp2 (TPX2) domain | 242 | 325 | 1.4E-24 | IPR027329 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 436 | - | - |
| Coils | Coil | Coil | 257 | 287 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35880.1 | TPX2 (targeting protein for Xklp2) protein family. | 0 |
| RefSeq | XP_052303990.1 | protein WVD2-like 4 isoform X2 [Populus trichocarpa] | 0 |
| Q9SJ62 | Protein WVD2-like 4 OS=Arabidopsis thaliana OX=3702 GN=WDL4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LLJ2 | Uncharacterized protein LOC105138210 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology