Basic Information
Locus ID:
nbisL1-mrna-13474
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001378F_pilon | 1742250 | 1753995 | + | nbisL1-mrna-13474 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 129,968.67 Da | 43.22 | 78.90 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 38 | 162 | 4.98153E-38 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 180 | 508 | 6.84238E-166 | - |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 607 | 864 | 1.2E-73 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 182 | 503 | 3.3E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 874 | 1084 | 5.1E-58 | IPR029346 |
| Pfam | PF00917 | MATH domain | 44 | 162 | 3.7E-19 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 35 | 171 | 3.43E-41 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 177 | 534 | 2.55E-97 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 667 | 789 | 2.6E-41 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 36 | 178 | 6.2E-51 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 790 | 887 | 4.3E-28 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 179 | 507 | 7.0E-89 | - |
| SMART | SM00061 | math_3 | 39 | 143 | 3.2E-19 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 182 | 506 | 40.074657 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 37 | 162 | 37.701492 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 183 | 198 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 422 | 439 | - | IPR018200 |
| Coils | Coil | Coil | 519 | 542 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_012090874.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MFL2 | ubiquitinyl hydrolase 1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology