Basic Information
Locus ID:
nbisL1-mrna-13464
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001378F_pilon | 1648803 | 1649846 | - | nbisL1-mrna-13464 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 39,011.85 Da | 45.63 | 72.13 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 120 | 162 | 2.0E-6 | IPR006652 |
| Pfam | PF12937 | F-box-like | 14 | 57 | 5.9E-6 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 165 | 210 | 2.7E-10 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 89 | 274 | 4.05E-36 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 57 | 1.23E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 68 | 2.3E-6 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 74 | 330 | 2.5E-34 | IPR015915 |
| SMART | SM00612 | kelc_smart | 176 | 223 | 1.2E-4 | IPR006652 |
| SMART | SM00612 | kelc_smart | 127 | 175 | 0.0013 | IPR006652 |
| SMART | SM00256 | fbox_2 | 17 | 57 | 5.5E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 58 | 9.02057 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44130.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_011047101.1 | PREDICTED: F-box/kelch-repeat protein At1g15670-like [Populus euphratica] | 0 |
| O80582 | F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana OX=3702 GN=At2g44130 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2L2B4 | F-box/kelch-repeat protein At1g15670-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology