Basic Information
Locus ID:
nbisL1-mrna-1345
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
UBC13
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 11068743 | 11070200 | - | nbisL1-mrna-1345 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 14,080.76 Da | 34.25 | 71.27 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 10 | 44 | 1.1E-11 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 76 | 118 | 1.6E-5 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 10 | 123 | 1.16E-22 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 7 | 125 | 4.2E-28 | IPR016135 |
| SMART | SM00212 | ubc_7 | 1 | 124 | 1.2E-4 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 124 | 22.612129 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 62 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16890.1 | ubiquitin-conjugating enzyme 36. UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro. | 0 |
| RefSeq | XP_017640846.1 | PREDICTED: ubiquitin-conjugating enzyme E2 36-like [Gossypium arboreum] | 0 |
| Q9FZ48 | Ubiquitin-conjugating enzyme E2 36 OS=Arabidopsis thaliana OX=3702 GN=UBC36 PE=1 SV=1 | 0 | |
| TrEMBL | A0A438CRH7 | Ubiquitin-conjugating enzyme E2 36 OS=Vitis vinifera OX=29760 GN=UBC36_2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for nbisL1-mrna-1345.