Basic Information
Locus ID:
nbisL1-mrna-13406
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 8804502 | 8807869 | + | nbisL1-mrna-13406 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 107,613.02 Da | 38.34 | 107.31 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 670 | 958 | 1.3121E-96 | - |
| Pfam | PF13516 | Leucine Rich repeat | 421 | 436 | 1.8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 351 | 410 | 7.9E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 70 | 1.6E-12 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 521 | 539 | 1.0 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 197 | 258 | 1.1E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 497 | 517 | 0.28 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 99 | 158 | 6.9E-7 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 542 | 557 | 1.9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 666 | 952 | 8.2E-41 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 273 | 573 | 4.42E-61 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 261 | 2.48E-46 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 645 | 955 | 9.17E-70 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 171 | 264 | 1.0E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 265 | 598 | 2.2E-96 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 633 | 739 | 2.4E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 741 | 972 | 2.5E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 170 | 5.8E-42 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 245 | 268 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 277 | 301 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 196 | 220 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 325 | 349 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 422 | 445 | 340.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 664 | 962 | 1.7E-37 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 121 | 144 | 31.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 373 | 396 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 397 | 421 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 518 | 542 | 81.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 145 | 169 | 65.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 664 | 962 | 37.007771 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 787 | 799 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 670 | 692 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24130.2 | - | 0 |
| RefSeq | XP_011033374.1 | PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Populus euphratica] | 0 |
| Q9ZUI0 | Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana OX=3702 GN=At2g24130 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K2A448 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G181200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg13455, jg18317, jg18318 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014930 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191580 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022289 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl42636, Sgl42647, Sgl47381 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011470, gene:ENSEOMG00000033192 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017140, CQ.Regalona.r1.8BG0018180 |
| Anacardiaceae | Pistacia vera | 7 | pistato.v30130240, pistato.v30130350, pistato.v30130390 ... |
| Apiaceae | Apium graveolens | 4 | Ag2G00387, Ag4G00069, Ag5G00190, Ag5G00191 |
| Arecaceae | Cocos nucifera | 5 | COCNU_01G004660, COCNU_01G004670, COCNU_11G012220 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103707436, gene-LOC103707465, gene-LOC103710481 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2495.V1.1, AsparagusV1_04.2496.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G27944, Ftri14G08983 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G24130.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000545m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g03080.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g021770.2N |
| Casuarinaceae | Casuarina equisetifolia | 6 | Ceq02G0425, Ceq02G0426, Ceq02G0427, Ceq02G0428, Ceq02G0429 ... |
| Casuarinaceae | Casuarina glauca | 5 | Cgl02G0450, Cgl02G0451, Cgl02G0452, Cgl02G0455, Cgl03G2756 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g07230, gene.Cymno06g07460 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g10090, gene.Thate04g24940 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00000769, Pov_00020111, Pov_00020113 |
| Poaceae | Echinochloa crus-galli | 9 | AH03.1964, AH06.578, AH06.579, AH06.580, BH06.633, CH03.2296 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_6AG0511660, gene-QOZ80_6AG0511670 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.5HG0482640.1, HORVU.MOREX.r3.7HG0636440.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_005297, gene-QYE76_009156, gene-QYE76_009158 ... |
| Poaceae | Oryza coarctata | 6 | Oco05G008780, Oco12G004020, Oco12G004030, Oco12G004040 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os06g08680.1, LOC_Os06g08690.1, LOC_Os06g08710.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_02G186600, gene-BS78_10G067900 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0405211, Pt_Chr0702146, Pt_Chr0705307 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G009720 |
| Poaceae | Thinopyrum elongatum | 6 | Tel5E01G363600, Tel5E01G363700, Tel7E01G042700 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5AG035640, gene_TRIDC5BG037490 ... |
| Poaceae | Triticum aestivum | 15 | TraesCS4A02G473300.1.cds1, TraesCS5A02G222200.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb099720_P001, Zm00001eb278310_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20071, nbis-gene-34902, nbis-gene-34903 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g31487, Zma_g31488, Zma_g32393 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.2411, evm.TU.LG18.1000, evm.TU.LG23.633 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g19060, gene.Posoc03g13270, gene.Posoc03g13280 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.181 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-13405, nbisL1-mrna-13406, nbisL1-mrna-7237 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-21239, nbisL1-mrna-2361 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16606, nbisL1-mrna-16607 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000033l.38, evm.TU.utg000005l.303 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16650 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14566 |
| Salicaceae | Populus euphratica | 4 | populus_peu04128, populus_peu12203, populus_peu14360 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132601350, gene-LOC132602061, gene-LOC132602182 |
| Solanaceae | Solanum chilense | 1 | SOLCI004191500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025451 |
| Zosteraceae | Zostera marina | 1 | Zosma03g06600.v3.1 |