Basic Information
Locus ID:
nbisL1-mrna-1340
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 11114604 | 11118746 | - | nbisL1-mrna-1340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 67,797.63 Da | 37.82 | 69.52 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 256 | 387 | 3.2417E-39 | IPR033734 |
| CDD | cd09612 | Jacalin | 20 | 146 | 3.9441E-46 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 20 | 147 | 3.7E-31 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 460 | 517 | 2.1E-7 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 256 | 388 | 1.3E-26 | IPR001229 |
| SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 514 | 572 | 3.33E-6 | - |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 246 | 387 | 3.79E-38 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 450 | 511 | 1.26E-14 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 9 | 146 | 9.94E-42 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 2 | 147 | 5.5E-56 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 443 | 522 | 5.7E-18 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 233 | 388 | 5.6E-48 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 256 | 389 | 2.0E-35 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 20 | 149 | 3.5E-40 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 9 | 149 | 48.535301 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 449 | 573 | 12.012697 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 245 | 389 | 46.734493 | IPR001229 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 236 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_039052837.1 | jacalin-related lectin 3-like isoform X1 [Hibiscus syriacus] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A2XRC6 | Jacalin-related lectin 3 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117000pilonHSYRG00034 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology