Basic Information
Locus ID:
nbisL1-mrna-134
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 2336258 | 2339635 | - | nbisL1-mrna-134 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 33,307.08 Da | 56.22 | 55.60 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 31 | 112 | 5.1E-19 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 214 | 272 | 3.4E-26 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 25 | 102 | 3.01E-17 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 214 | 2.98E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 103 | 160 | 5.23E-18 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 229 | 3.2E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 238 | 278 | 1.4E-19 | - |
| SMART | SM00184 | ring_2 | 167 | 209 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 102 | 166 | 33.754745 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 24 | 100 | 25.412897 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 167 | 209 | 11.781134 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021908000.1 | E3 ubiquitin-protein ligase RZFP34 [Carica papaya] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KUI9 | RING finger and CHY zinc finger domain-containing protein 1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology