Basic Information
Locus ID:
nbisL1-mrna-13388
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 8650288 | 8654796 | - | nbisL1-mrna-13388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 69,863.92 Da | 40.30 | 96.93 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 66 | 1.6E-12 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 94 | 152 | 8.3E-10 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 297 | 564 | 1.7E-42 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 276 | 565 | 9.43E-75 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 191 | 8.75E-36 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 264 | 371 | 1.5E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 208 | 3.9E-54 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 372 | 582 | 7.1E-60 | - |
| SMART | SM00369 | LRR_typ_2 | 116 | 139 | 0.71 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 92 | 114 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 140 | 171 | 48.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 295 | 564 | 1.5E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 295 | 545 | 35.24102 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 301 | 323 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 414 | 426 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 119 | 132 | 9.7E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 164 | 177 | 9.7E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 642 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30520.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_002309372.1 | - | 0 |
| Q8VYT3 | Probable LRR receptor-like serine/threonine-protein kinase At4g30520 OS=Arabidopsis thaliana OX=3702 GN=At4g30520 PE=1 SV=1 | 0 | |
| TrEMBL | A0A836IXA8 | Leucine-rich repeat family protein OS=Salix suchowensis OX=1278906 GN=IMY05_006G0143400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology