Basic Information
Locus ID:
nbisL1-mrna-1338
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000017F_pilon | 2338740 | 2346318 | + | nbisL1-mrna-1338 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 108,357.19 Da | 36.61 | 102.87 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 653 | 913 | 7.31311E-94 | - |
| Pfam | PF00069 | Protein kinase domain | 650 | 911 | 7.6E-45 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 116 | 175 | 9.7E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 427 | 486 | 5.4E-10 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 63 | 3.4E-9 | IPR013210 |
| Pfam | PF13516 | Leucine Rich repeat | 233 | 250 | 2.0 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 624 | 913 | 2.29E-75 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 48 | 257 | 2.04E-44 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 203 | 538 | 4.47E-65 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 723 | 922 | 9.9E-64 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 616 | 722 | 2.7E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 306 | 574 | 5.3E-80 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 188 | 305 | 9.1E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 187 | 2.1E-50 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 210 | 234 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 90 | 114 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 473 | 497 | 99.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 138 | 161 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 302 | 329 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 353 | 377 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 449 | 472 | 31.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 162 | 186 | 48.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 647 | 917 | 3.0E-28 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 427 | 450 | 7.126702 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 647 | 917 | 35.410629 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 164 | 186 | 7.165205 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 768 | 780 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 653 | 675 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26330.1 | Leucine-rich receptor-like protein kinase family protein. Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. | 0 |
| RefSeq | XP_002516144.1 | LRR receptor-like serine/threonine-protein kinase ERECTA isoform X1 [Ricinus communis] | 0 |
| Q42371 | LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana OX=3702 GN=ERECTA PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MQU8 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg14068, jg23990, jg4602, jg7950, jg7951 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8054 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034440 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033750 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20415, Sbi_jg23364 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17147 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009075 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63595, Sgl68082 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016861, gene:ENSEOMG00000022156 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013550, CQ.Regalona.r1.2BG0015610 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30181640, pistato.v30260850 |
| Apiaceae | Apium graveolens | 4 | Ag2G01558, Ag2G01938, Ag7G00418, Ag9G02574 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G004100, COCNU_08G006160 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704912, gene-LOC103721746 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1302.V1.1, AsparagusV1_03.1303.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G21699, Ftri1G09595, Ftri3G24629 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G26330.1, AT5G07180.1, AT5G62230.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001898m.g.v1.0, Thhalv10003615m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g25430.v2.2, Sp4g06960.v2.2, Sp6g35720.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g024810.2N, BniB02g053710.2N, BniB06g010510.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2029, Ceq03G2152 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2101, Cgl03G2294 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g01110, gene.Cymno18g04630 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g05590, gene.Thate05g25620 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2262, evm.TU.LG07.694 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013390, Pov_00040854 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G04460, Lb1G07869, Lb2G12716, Lb4G25723 |
| Poaceae | Echinochloa crus-galli | 9 | AH06.497, AH06.682, AH07.3673, BH06.187, BH06.756, BH07.3483 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0147880, gene-QOZ80_2BG0203290 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.6HG0620170.1, HORVU.MOREX.r3.7HG0644570.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_025829, gene-QYE76_027423, gene-QYE76_027630 |
| Poaceae | Oryza coarctata | 6 | Oco03G023250, Oco04G023830, Oco11G001430, Oco11G004670 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g53720.1, LOC_Os06g03970.1, LOC_Os06g10230.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G295600, gene-BS78_10G022700 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0203053, Pt_Chr0304993, Pt_Chr0405065, Pt_Ctg00141 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G000840, Chr11G020700, Chr11G023880, Chr15G002120 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel6E01G593400, Tel7E01G139500, Tel7E01G326500 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC4AG062720, gene_TRIDC6AG050310 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS4A02G422700.1, TraesCS6A02G336300.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb256740_P004, Zm00001eb278640_P001 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-34988, nbis-gene-40011, nbis-gene-40299 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g17273, Zma_g29034, Zma_g29298, Zma_g31281, Zma_g31537 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.846, evm.TU.LG15.88 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc07g02910, gene.Posoc08g04520 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.654, evm.TU.Scaffold_4_RagTag.1093 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12606, nbisL1-mrna-25861 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-15597, nbisL1-mrna-18568, nbisL1-mrna-7054 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-12871, nbisL1-mrna-12872, nbisL1-mrna-1338 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.700, evm.TU.utg000010l.326 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000131, Maker00008771, Maker00015066 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-18292, nbisL1-mrna-2052, nbisL1-mrna-540 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-8056, nbisL1-mrna-8944, nbisL1-mrna-9406 |
| Salicaceae | Populus euphratica | 5 | populus_peu04947, populus_peu04948, populus_peu29180 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132631775, gene-LOC132635992 |
| Solanaceae | Solanum chilense | 2 | SOLCI004318000, SOLCI006698600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014834, gene-LOC107028570 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13363, gene_5183 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G1946, TC11G1493 |
| Zosteraceae | Zostera marina | 4 | Zosma01g09160.v3.1, Zosma02g09020.v3.1, Zosma03g25670.v3.1 ... |