Basic Information
Locus ID:
nbisL1-mrna-13379
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Translation factor GUF1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001378F_pilon | 961626 | 971732 | - | nbisL1-mrna-13379 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 76,751.90 Da | 37.75 | 91.48 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01891 | TypA_BipA | 94 | 287 | 8.97568E-130 | - |
| CDD | cd03710 | BipA_TypA_C | 488 | 567 | 6.24169E-34 | IPR035651 |
| CDD | cd16263 | BipA_III | 395 | 473 | 1.73284E-44 | - |
| CDD | cd03691 | BipA_TypA_II | 295 | 388 | 2.23148E-38 | - |
| Pfam | PF00009 | Elongation factor Tu GTP binding domain | 94 | 285 | 9.4E-52 | IPR000795 |
| Pfam | PF03144 | Elongation factor Tu domain 2 | 309 | 378 | 6.7E-11 | IPR004161 |
| Pfam | PF00679 | Elongation factor G C-terminus | 486 | 571 | 2.0E-18 | IPR000640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 85 | 296 | 3.16E-54 | IPR027417 |
| SUPERFAMILY | SSF54980 | EF-G C-terminal domain-like | 488 | 603 | 9.11E-26 | IPR035647 |
| SUPERFAMILY | SSF50447 | Translation proteins | 242 | 388 | 9.72E-29 | IPR009000 |
| SUPERFAMILY | SSF54980 | EF-G C-terminal domain-like | 393 | 477 | 3.96E-13 | IPR035647 |
| Gene3D | G3DSA:3.30.70.870 | Elongation Factor G (Translational Gtpase), domain 3 | 396 | 679 | 4.9E-115 | - |
| Gene3D | G3DSA:2.40.50.250 | bipa protein | 573 | 680 | 4.9E-115 | IPR042116 |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 289 | 389 | 2.2E-29 | - |
| Gene3D | G3DSA:3.30.70.240 | - | 479 | 572 | 4.9E-115 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 92 | 288 | 6.6E-61 | IPR027417 |
| SMART | SM00838 | EFG_C_a | 485 | 574 | 3.0E-4 | IPR000640 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 95 | 226 | 4.6E-21 | IPR005225 |
| TIGRFAM | TIGR01394 | TypA_BipA: GTP-binding protein TypA/BipA | 95 | 684 | 2.4E-273 | IPR006298 |
| ProSiteProfiles | PS51722 | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 93 | 288 | 51.779816 | IPR000795 |
| ProSitePatterns | PS00301 | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 134 | 149 | - | IPR031157 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 97 | 110 | 3.4E-13 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 141 | 149 | 3.4E-13 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 213 | 222 | 3.4E-13 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 161 | 171 | 3.4E-13 | IPR000795 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13650.1 | elongation factor family protein. | 0 |
| RefSeq | XP_021620790.1 | putative elongation factor TypA-like SVR3, chloroplastic [Manihot esculenta] | 0 |
| F4K410 | Putative elongation factor TypA-like SVR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SVR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KFB1 | Uncharacterized protein MANES_08G049400 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15920 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4664 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021787 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59302, Sbi_jg63322 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23556 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018394 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02687, Sgl07844 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012880, gene:ENSEOMG00000029837 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0020930, CQ.Regalona.r1.3BG0021720 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30186830 |
| Apiaceae | Apium graveolens | 1 | Ag10G02361 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G012150 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704562 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1492.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G17070, Ftri12G12173 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G13650.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012883m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g30370.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g048910.2N, BniB05g024670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1080 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1227 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g04830 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0181s00024.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g06410 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2474 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006657 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16252 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.1272, AH07.1297, BH07.1356, CH07.1074 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0109660, gene-QOZ80_2BG0163450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0587920.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_022237 |
| Poaceae | Oryza coarctata | 1 | Oco03G007830 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g18450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G123000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201903 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G000590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G405100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG028680, gene_TRIDC6BG036660 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G192800.1, TraesCS6B02G224800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb236900_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34092 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15323 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1221, evm.TU.LG21.821 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g09990 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1181 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6438 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2765 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4245 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.795 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016654 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10979 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13379 |
| Salicaceae | Populus euphratica | 1 | populus_peu10970 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636519 |
| Solanaceae | Solanum chilense | 1 | SOLCI005990500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014339 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4057 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2437 |
| Zosteraceae | Zostera marina | 2 | Zosma03g05350.v3.1, Zosma07g02630.v3.1 |