Basic Information
Locus ID:
nbisL1-mrna-13369
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001378F_pilon | 892141 | 897691 | - | nbisL1-mrna-13369 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 60,604.49 Da | 35.82 | 83.73 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 422 | 456 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 385 | 417 | 2.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 265 | 1.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 228 | 548 | 4.39E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 221 | 343 | 2.5E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 344 | 554 | 2.7E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 223 | 265 | 3.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 420 | 457 | 4.9E-5 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 33 | 57 | 0.0063 | IPR000571 |
| SMART | SM00320 | WD40_4 | 507 | 544 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 463 | 504 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 380 | 417 | 2.9E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 387 | 420 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 387 | 426 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 32 | 58 | 11.131343 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 233 | 265 | 11.998316 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 233 | 274 | 15.420926 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 427 | 456 | 9.40565 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 404 | 418 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 252 | 266 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 444 | 458 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 404 | 418 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 94 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021687428.1 | zinc finger CCCH domain-containing protein 48-like isoform X4 [Hevea brasiliensis] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2LRF0 | C3H1-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology