Basic Information
Locus ID:
nbisL1-mrna-13366
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 8494739 | 8499245 | - | nbisL1-mrna-13366 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 55,445.74 Da | 48.03 | 84.95 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 208 | 9.9E-16 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 1.3E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 273 | 5.2E-8 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 277 | 1.63E-52 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 320 | 376 | 4.95E-6 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 148 | 284 | 3.2E-27 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 389 | 3.8E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 9 | 147 | 5.3E-32 | IPR036770 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 0.16 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 4.0E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.036 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 2.1E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 5.0E-6 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 370 | 0.0057 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.41059 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.91158 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.887478 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 371 | 9.479666 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 11.373236 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 208 | 12.169178 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.030149 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 12.42232 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 12.60929 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.301834 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 7.3E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 7.3E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_048227981.1 | E3 ubiquitin-protein ligase XBAT32 isoform X1 [Ricinus communis] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JXI0 | Putative E3 ubiquitin-protein ligase XBOS32 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology