Basic Information
Locus ID:
nbisL1-mrna-13365
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
WD40 region of Ge1, enhancer of mRNA-decapping protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000224F_pilon | 3226037 | 3229900 | - | nbisL1-mrna-13365 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 93,877.42 Da | 48.68 | 87.79 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16529 | WD40 region of Ge1, enhancer of mRNA-decapping protein | 91 | 405 | 2.0E-18 | IPR032401 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 94 | 366 | 1.31E-18 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 75 | 384 | 4.9E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 294 | 340 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 291 | 0.0034 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 172 | 0.56 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 258 | 291 | 9.806668 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13300.3 | - | 0 |
| RefSeq | XP_012082220.1 | enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas] | 0 |
| Q9LTT8 | Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana OX=3702 GN=VCS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2J640 | Ge1_WD40 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20217, jg24642 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7098 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009135 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g091120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18599, Sbi_jg37024 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4871 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00017262, GOSA_00017263 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23632, Sgl28833 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011001, gene:ENSEOMG00000030169 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0000180, CQ.Regalona.r1.4BG0026690 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30066310, pistato.v30151180, pistato.v30151450 |
| Apiaceae | Apium graveolens | 2 | Ag2G02308, Ag3G02426 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G013150, COCNU_11G006200 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695987, gene-LOC103696209, gene-LOC120111829 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.484.V1.1, AsparagusV1_05.2169.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G07956, Ftri15G07998, Ftri7G09129 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G13290.1, AT3G13300.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10019901m.g.v1.0, Thhalv10019903m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g11490.v2.2, Sp3g11500.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g051920.2N, BniB01g059160.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1552, Ceq02G1433 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1714, Cgl02G1477 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g07070 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0061s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g20720, gene.Thate04g27310, gene.Thate08g11560 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5478 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG05.2099, evm.TU.LG12.1301, evm.TU.LG12.1303 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037982 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37320, Lb2G11789 |
| Poaceae | Echinochloa crus-galli | 7 | AH06.1226, AH07.3276, BH06.1277, BH07.3095, CH06.1410 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0143850, gene-QOZ80_2BG0199260 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0610930.1, HORVU.MOREX.r3.7HG0674380.1 |
| Poaceae | Oryza coarctata | 4 | Oco03G020230, Oco04G020930, Oco11G007830, Oco12G007840 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g49090.1, LOC_Os06g19660.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G258900, gene-BS78_10G126000, gene-BS78_K043000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203578, Pt_Chr0404397 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G003400, Chr09G021350, Chr10G001330, Chr11G017420 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G522200, Tel7E01G400300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG043700, gene_TRIDC6BG051300 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G286100.3, TraesCS6B02G314800.3 ... |
| Poaceae | Zea mays | 3 | Zm00001eb189120_P001, Zm00001eb253140_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-21986, nbis-gene-45616, nbis-gene-8875 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14306, Zma_g17051, Zma_g31778 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.272, evm.TU.LG02.661, evm.TU.LG04.481 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g16370 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1417, evm.TU.Scaffold_8_RagTag.360 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20075, nbisL1-mrna-20216 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13554, nbisL1-mrna-2818 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-13364, nbisL1-mrna-13365, nbisL1-mrna-17964 |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000002l.239, evm.TU.utg000018l.762 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011642 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9063 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12103 |
| Salicaceae | Populus euphratica | 8 | populus_peu00036, populus_peu10494, populus_peu17074 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617622, gene-LOC132627692 |
| Solanaceae | Solanum chilense | 2 | SOLCI005594100, SOLCI006743000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002190, gene-LOC107025807 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24580_chr08_-, gene_17897 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2540, TC06G0575 |
| Zosteraceae | Zostera marina | 1 | Zosma01g39580.v3.1 |