Basic Information
Locus ID:
nbisL1-mrna-13359
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
iq-domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 1092810 | 1097377 | - | nbisL1-mrna-13359 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 87,192.07 Da | 58.37 | 62.33 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00612 | IQ calmodulin-binding motif | 146 | 163 | 0.0033 | IPR000048 |
| Pfam | PF00612 | IQ calmodulin-binding motif | 126 | 142 | 0.0043 | IPR000048 |
| Pfam | PF13178 | Protein of unknown function (DUF4005) | 695 | 762 | 1.6E-6 | IPR025064 |
| Gene3D | G3DSA:1.20.5.190 | - | 122 | 170 | 3.1E-9 | - |
| SMART | SM00015 | iq_5 | 121 | 143 | 0.025 | IPR000048 |
| SMART | SM00015 | iq_5 | 144 | 165 | 5.6 | IPR000048 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 144 | 173 | 8.2606 | IPR000048 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 122 | 150 | 8.4985 | IPR000048 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 736 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 597 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 619 | 642 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19870.1 | IQ-domain 32. | 0 |
| RefSeq | XP_021682378.1 | protein IQ-DOMAIN 32 [Hevea brasiliensis] | 0 |
| Q9FXI5 | Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana OX=3702 GN=IQD32 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2JG89 | Uncharacterized protein MANES_18G016100 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg11802 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8502 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036376 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39750, Sbi_jg55103 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14591 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013118 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12465, Sgl17743 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016978, gene:ENSEOMG00000035795 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0018940, CQ.Regalona.r1.1BG0004250 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30047510, pistato.v30049570 |
| Apiaceae | Apium graveolens | 2 | Ag4G02259, Ag9G00864 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G001770, COCNU_08G006910, COCNU_10G001250 |
| Arecaceae | Phoenix dactylifera | 6 | gene-LOC103703868, gene-LOC103708215, gene-LOC103716349 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1651.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri6G31675, Ftri8G00256, Ftri9G11888 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G19870.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006839m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g008390.2N, BniB04g034620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0919 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0994 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g05050, gene.Cymno10g04230 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g20490, gene.Thate08g19750 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1347, nbisL1-mrna-8893 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.667 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020711 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37439, Lb3G15844 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2610, BH09.2834, CH09.3033 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300600, gene-QOZ80_4BG0331270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0201150.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047181 |
| Poaceae | Oryza coarctata | 2 | Oco07G018360, Oco08G017690 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56740.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G270800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300429 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G001730, Chr25G001340, Chr26G017580, Chr30G001360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G834900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG069530, gene_TRIDC2BG075120 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G492300.1, TraesCS2B02G520500.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb067350_P001, Zm00001eb432990_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23114, nbis-gene-6107 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g20623, Zma_g22157, Zma_g22722 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG12.1709 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g12060, gene.Posoc06g08160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1253 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19005 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-812 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15382 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.403 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003398 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13359 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11115 |
| Salicaceae | Populus euphratica | 2 | populus_peu15318, populus_peu32966 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628098 |
| Solanaceae | Solanum chilense | 1 | SOLCI000409100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017764 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31215_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2802 |
| Zosteraceae | Zostera marina | 3 | Zosma01g26330.v3.1, Zosma05g31600.v3.1, Zosma1103g00060.v3.1 |