Basic Information
Locus ID:
nbisL1-mrna-13348
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 1247388 | 1253291 | + | nbisL1-mrna-13348 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 145,095.91 Da | 36.26 | 93.90 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 81 | 388 | 1.13041E-73 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 347 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 117 | 151 | 7.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 156 | 193 | 4.0E-8 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 886 | 1288 | 2.7E-167 | IPR010714 |
| Pfam | PF04053 | Coatomer WD associated region | 413 | 839 | 2.3E-130 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 269 | 302 | 9.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 235 | 1.8E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 72 | 386 | 4.07E-73 | IPR036322 |
| SUPERFAMILY | SSF63829 | Calcium-dependent phosphotriesterase | 306 | 664 | 1.57E-12 | - |
| Gene3D | G3DSA:1.25.40.470 | - | 711 | 883 | 2.5E-63 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 71 | 390 | 1.5E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 154 | 193 | 2.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 70 | 109 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 196 | 235 | 4.6E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 388 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 112 | 151 | 6.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 347 | 6.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 303 | 2.4E-6 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 71 | 1284 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 315 | 347 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 203 | 236 | 15.454345 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 161 | 193 | 11.365591 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 202 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 312 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 315 | 356 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 203 | 236 | 12.736494 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 119 | 151 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 119 | 160 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 305 | 10.996502 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 222 | 236 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 222 | 236 | 8.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 290 | 304 | 8.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 180 | 194 | 8.2E-7 | IPR020472 |
| Coils | Coil | Coil | 1195 | 1222 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_021816231.1 | coatomer subunit alpha-1-like [Prunus avium] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2IV55 | Coatomer subunit alpha OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology