Basic Information
Locus ID:
nbisL1-mrna-13341
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 1353986 | 1356892 | + | nbisL1-mrna-13341 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 53,448.55 Da | 34.68 | 72.82 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 358 | 481 | 5.7303E-36 | IPR033734 |
| CDD | cd09612 | Jacalin | 21 | 151 | 9.23505E-41 | IPR033734 |
| CDD | cd09612 | Jacalin | 184 | 314 | 2.86634E-40 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 21 | 152 | 3.2E-32 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 348 | 482 | 5.8E-30 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 184 | 314 | 1.5E-28 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 174 | 313 | 8.9E-41 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 338 | 482 | 5.63E-41 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 11 | 152 | 6.41E-43 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 2 | 151 | 2.4E-54 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 161 | 313 | 3.3E-50 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 334 | 480 | 1.9E-49 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 184 | 315 | 4.2E-36 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 348 | 482 | 2.6E-38 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 21 | 152 | 9.4E-38 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 337 | 482 | 48.450886 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 173 | 315 | 47.23159 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 10 | 152 | 48.113235 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021667091.1 | jacalin-related lectin 3-like [Hevea brasiliensis] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2ISF8 | Jacalin-related lectin 3 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology