Basic Information
Locus ID:
nbisL1-mrna-13340
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 1377680 | 1382317 | + | nbisL1-mrna-13340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 65,979.37 Da | 36.72 | 72.16 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 256 | 383 | 3.17207E-38 | IPR033734 |
| CDD | cd09612 | Jacalin | 24 | 154 | 2.39438E-46 | IPR033734 |
| CDD | cd09612 | Jacalin | 452 | 581 | 4.95075E-39 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 255 | 383 | 6.7E-29 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 449 | 581 | 3.8E-31 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 26 | 155 | 1.3E-32 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 438 | 580 | 4.06E-42 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 242 | 382 | 7.98E-39 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 13 | 155 | 6.8E-44 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 228 | 383 | 4.2E-47 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 433 | 581 | 7.2E-51 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 5 | 153 | 1.9E-55 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 24 | 155 | 3.8E-42 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 253 | 384 | 6.7E-37 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 449 | 582 | 1.8E-44 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 438 | 582 | 47.541103 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 13 | 155 | 52.052498 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 242 | 384 | 48.235165 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021636642.1 | jacalin-related lectin 3-like [Hevea brasiliensis] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2IXV7 | Pentatricopeptide repeat-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology