Basic Information
Locus ID:
nbisL1-mrna-1333
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
May serve as docking site to facilitate the association of other proteins to the plasma membrane
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000150F_pilon | 5441185 | 5444594 | + | nbisL1-mrna-1333 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 12,952.04 Da | 37.25 | 94.07 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01814 | Ubl_MUBs_plant | 6 | 93 | 2.62713E-44 | - |
| Pfam | PF13881 | Ubiquitin-2 like Rad60 SUMO-like | 6 | 115 | 1.8E-41 | IPR039540 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 97 | 4.37E-25 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 100 | 3.2E-41 | - |
| PIRSF | PIRSF032572 | MUB | 1 | 118 | 1.8E-47 | IPR017000 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 7 | 73 | 9.329968 | IPR000626 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24990.1 | Ubiquitin family protein. geranylgeranylated protein ATGP4 | 0 |
| RefSeq | XP_011044089.1 | PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Populus euphratica] | 0 |
| Q9SW27 | Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana OX=3702 GN=MUB3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KN29 | Membrane-anchored ubiquitin-fold protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology