Basic Information
Locus ID:
nbisL1-mrna-13292
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001378F_pilon | 268291 | 285281 | + | nbisL1-mrna-13292 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 130,640.44 Da | 43.39 | 79.02 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 196 | 524 | 1.38366E-167 | - |
| CDD | cd00121 | MATH | 55 | 178 | 1.1989E-40 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 623 | 875 | 6.0E-75 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 198 | 519 | 7.2E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 885 | 1095 | 1.2E-56 | IPR029346 |
| Pfam | PF00917 | MATH domain | 60 | 179 | 8.1E-19 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 51 | 187 | 2.78E-42 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 193 | 551 | 5.3E-97 | IPR038765 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 52 | 193 | 1.4E-51 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 801 | 898 | 2.6E-27 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 194 | 523 | 5.6E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 683 | 800 | 1.0E-44 | - |
| SMART | SM00061 | math_3 | 55 | 159 | 5.5E-20 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 198 | 522 | 40.389378 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 53 | 178 | 38.187317 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 438 | 455 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 199 | 214 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| Coils | Coil | Coil | 535 | 563 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_034909427.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Populus alba] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MFK6 | ubiquitinyl hydrolase 1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology