Basic Information
Locus ID:
nbisL1-mrna-13281
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000224F_pilon | 2723900 | 2729516 | - | nbisL1-mrna-13281 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 20,819.81 Da | 41.21 | 80.84 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 3 | 108 | 9.70982E-50 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 5 | 112 | 5.1E-32 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 112 | 4.43E-40 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 130 | 8.4E-44 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 138 | 6.8E-37 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 144 | 31.432987 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 68 | 83 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56150.2 | ubiquitin-conjugating enzyme 30. | 0 |
| RefSeq | XP_007206092.1 | ubiquitin-conjugating enzyme E2-17 kDa [Prunus persica] | 0 |
| Q8S920 | Ubiquitin-conjugating enzyme E2 5A OS=Oryza sativa subsp. japonica OX=39947 GN=UBC5A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LWA2 | UBC core domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 2 | Ag3G01322, AgUnG00509 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1566 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13281 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011994 |
| Salicaceae | Populus euphratica | 1 | populus_peu18935 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2347 |