Basic Information
Locus ID:
nbisL1-mrna-13263
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 4961143 | 4967385 | - | nbisL1-mrna-13263 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 86,487.07 Da | 45.48 | 77.20 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 17 | 162 | 9.46083E-57 | - |
| Pfam | PF00069 | Protein kinase domain | 456 | 710 | 4.9E-40 | IPR000719 |
| Pfam | PF00582 | Universal stress protein family | 18 | 151 | 1.1E-8 | IPR006016 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 434 | 713 | 5.93E-68 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 18 | 159 | 2.34E-10 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 17 | 159 | 3.3E-11 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 421 | 526 | 4.9E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 527 | 733 | 2.8E-48 | - |
| SMART | SM00220 | serkin_6 | 454 | 724 | 5.8E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 454 | 731 | 35.311691 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 572 | 584 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 752 | 781 | - | - |
| Coils | Coil | Coil | 322 | 342 | - | - |
| Coils | Coil | Coil | 382 | 402 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78940.3 | - | 0 |
| RefSeq | XP_021681652.1 | U-box domain-containing protein 52-like [Hevea brasiliensis] | 0 |
| Q8S8S7 | U-box domain-containing protein 34 OS=Arabidopsis thaliana OX=3702 GN=PUB34 PE=3 SV=1 | 0 | |
| TrEMBL | A0A1Q3CFF2 | Pkinase domain-containing protein/Usp domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_22256 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology